shaoxing Dai's repositories
Anti-HIV_predictor
Development of new, effective and affordable drugs against HIV is urgently needed. In this project, we developed a method called Anti-HIV-Predictor for predicting the anti-HIV activity of given compounds. This method is rapid and accurate (accuracy >93% and AUC > 0.958).
anti-SARS-CoV-2
The code and associated dataset for the study of “In silico identification of anti-SARS-CoV-2 medicinal plants using cheminformatics and machine learning”
daishaoxing.github.io
Home page of daishaoxing
admin-training
Galaxy Admin Training
awesome-biological-visualizations
A list of web-based interactive biological data visualizations.
chemical_vae
Code for 10.1021/acscentsci.7b00572, now running on Keras 2.0 and Tensorflow
Chemogenomic-DTI-Prediction-Methods
Algorithms for prediction of drug-target interactions via computational (chemogenomic) methods
DeepAlign
DeepAlign: the protein structure analysis toolkit
DeepPurpose
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)
genome-analysis
Genome analysis pipeline that follows GATK best practices from Broad Institute
hnRNPA2B1
Data analysis code for the study of hnRNPA2B1, is a novel drug target for HBV infection.
MetaboAnalystR
R package for MetaboAnalyst
OA-SCNT
Data analysis code for the study of OA-SCNT, a method to systematically evaluate the efficiency and safety of base editors in primates. The title of this study is "Cloning and base-editing of GFP transgenic rhesus monkey and off-target analysis"
phantompeakqualtools
This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays.
Pocket2Drug
Pytorch implementation of Pocket2Drug: a generative deep learning model to predict binding drugs for ligand-binding sites.
Pocket2Mol
Pocket2Mol: Efficient Molecular Sampling Based on 3D Protein Pockets
primate_cerebral_organoids
Scripts and functions achieve for the paper "Single-cell genomic atlas of great ape cerebral organoids uncovers human-specific features of brain development" (https://www.biorxiv.org/content/10.1101/685057v1)
Proteomic_BrainDev
Spatiotemporal proteomic atlas of multiple brain regions across early fetal to neonatal stages in cynomolgus monkey
PyBioMed
machine learning, molecular descriptor
PyFingerprint
Python tool for generate fingerprints of a molecule
RADAR
RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.
RDataAnalytics
Data Analytics with R, instructed by Xinbo Ai, at Beijing University of Posts and Telecommunications
word_cloud
A little word cloud generator in Python
Work_flow_of_population_genetics
整理常用的群体遗传学分析流程和脚本