Chengxin Dai's repositories
dia_sum
Patrick's repository
nextflow
A DSL for data-driven computational pipelines
deep_learning_in_proteomics
A list of tools on proteomics using deep learning
sphinx
Main repository for the Sphinx documentation builder
RaMS
R-based access to Mass-Spectrometry data
proteomicsdiann
Proteomics DIA Mass Spectrometry Pipeline
DiaNN
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
ProteomicsVisualization
This is a collection of minimal code to visualize various aspects of proteomics data.
py-pgatk
Python tools for proteogenomics analysis toolkit
rstudio
RStudio is an integrated development environment (IDE) for R
shared
shared repo
pquant
R package for protemics downstream a analysis
tower-action
GitHub Action to launch a workflow using Nextflow Tower.
proteomicstmt
nf-core pipeline for proteomics TMT analysis
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
bioinformatics-workflows
minimal example implementations for bioinformatics workflow managers
beautiful-jekyll
✨ Build a beautiful and simple website in literally minutes. Demo at https://beautifuljekyll.com
Machine-Learning-with-Python
Python code for common Machine Learning Algorithms
OHSU_TMT_Publications
List of publications where TMT labeling was used in the OHSU PSR core.
bioconda-recipes
Conda recipes for the bioconda channel.
proteomicslfq
UNDER CONSTRUCTION - Proteomics label-free quantification (LFQ) analysis pipeline
proteogenomics-analysis-workflow
IPAW: a Nextflow workflow for proteogenomics
Sample-analisys
:microscope: Cell counting using Python to identify, through images, the approximate amount of cells present in a sample :petri_dish:
Diamond
A Multi-modal DIA Mass Spectrometry Data Processing Pipeline
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
nightingale
Data visualisation web components for the life sciences.
BP-Network
Multi-Classification on dataset of MNIST
jsdrf
java library to validate SDRF file formats
DeepNovo-DIA
De novo peptide sequencing for DDA and DIA by deep learning
qccalculator
Development for python driven QC calculation (QCCalculator)