Alex Carlin's repositories
bagel-project
How to build a large dataset of enzyme variants to evaluate enzyme design algorithms
enzyme_design_constraint_converter
Scripts for converting Rosetta enzyme design constraint files into regular Rosetta constraint files
bglb_family
Quantitative prediction of mutant function across an enzyme family
protein-transformers
Use generative ML to design new proteins using this simple, hackable implementation of protein transformer models
bagel-foldit
Foldit model of BglB for the Bagel project
bglb_thermal
Large data set of thermal stabilities for mutants of BglB, and associated publication
bagel-protocol
Laboratory protocol for the Bagel project
bglb_machine_learning
Machine learning analysis of BglB data set
bigboogie.info
The code for "bigboogie.info", Alex's essays about guitar playing
deep-learning-biology
Resources for deep learning in bioengineering with a focus on proteins
enzyme-design-kit
Tools for enzyme engineers
bagel-eval
A tough eval for protein design with generative ML
biotite
A comprehensive library for computational molecular biology
carlin-cookbook
Carlin Family Cookbook
carlingardens.com
Website for Carlin Gardens
inkisbetter.com
Alex's personal web site
muse
Play albums in your terminal
neat_sequencing
Dense multiplexed PacBio sequencing for synthetic biology
retro-recorder
A time-travelling tape recorder for when you forget to press "Record"
rhodo
AI-powered protein design app for iPad
sonoma.systems
Marketing website for Sonoma Systems
trotsky
A Slack bot
Wheels
A music-friendly tape recorder for iPhone