This is a command-line interface (CLI) for the d3b-dff package.
Clone the repository:
git clone git@github.com:d3b-center/d3b-dff-cli.git
cd d3b-dff-cli
Install the package using pip:
pip install .
d3b -h
usage: d3b [-h] {version,validation,dewrangle} ...
A command-line interface for d3b-dff-cli.
optional arguments:
-h, --help show this help message and exit
Available Commands:
{version,validation,dewrangle}
version Display version information.
validation Validation commands
dewrangle Dewrangle commands
To display the version information:
d3b version
To perform validation, use the validation command with subcommands:
d3b validation -h
usage: d3b validation [-h] {manifest,bam,url} ...
optional arguments:
-h, --help show this help message and exit
Validation Subcommands:
{manifest,bam,url}
manifest Manifest validation
bam Validator for BAM file @RG based on Samtools
url Validator for URLs
To perform dewrangling tasks, use the dewrangle command with subcommands:
d3b dewrangle volume