d-v-b

zarr-jpeg

Lossy JPEG compression for 8 bit arrays stored with zarr

presentations

Presentation materials

aoc

advent of code

pydantic-bigstitcher

Pydantic models for BigStitcher metadata.

zarr-benchmarks

Benchmarks for zarr-python

zarr-python

An implementation of chunked, compressed, N-dimensional arrays for Python.

dotfiles

my dotfiles

cellmap_practice

d-v-b

d-v-b

d-v-b.github.io

A truly remarkable website

dacapo

A framework for easy application of established machine learning techniques on large, multi-dimensional images.

dask

Parallel computing with task scheduling

dask-jobqueue

Deploy Dask on job schedulers like PBS, SLURM, and SGE

fastapi_blog

fastapi tutorial

fibsem-metadata

Human-readable descriptions of our datasets

fibsem-tools

Tools for handling FIB-SEM data and annotations

filesystem_spec

A specification that python filesystems should adhere to.

funlib.persistence

Interfaces for data (arrays and graphs) and storage formats (databases and file formats)

intake

Intake is a lightweight package for finding, investigating, loading and disseminating data.

n5

Not HDF5

neuroglancer

WebGL-based viewer for volumetric data

ngff

Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

numcodecs

A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.

OpenAPI-Specification

The OpenAPI Specification Repository

status-board

generate a project summary in SVG from JSON

tutorial

unityvr

Tools for analyzing data collected with a custom unity-based VR for insects.

xpublish

Publish Xarray Datasets via a REST API.

zarr-specs

Zarr core protocol for storage and retrieval of N-dimensional typed arrays

zeps

Zarr Enhancement Proposals