David Laub's repositories
basenji2-pytorch
PyTorch implementation of Basenji2.
TritonHacks-Data-Viz
Data visualization/data science starter kit for TritonHacks 2021, a high-school hackathon.
datahacks2020
Science Track: A Case Study of Race in Diabetes Healthcare
dlaub_helpers
Helper functions for my work, mainly bioinformatics related.
dlaub_setup
Setup files for me.
github-slideshow
A robot powered training repository :robot:
MethylDrift
Bayesian inference of biological age of tissues subject to differential methylation drift.
conformal-prediction
Lightweight, useful implementation of conformal prediction on real data. (a.k.a. conformal inference)
dlm-transfer-learning
DNA language model transfer learning.
genome-loader
Pipeline for efficient genomic data processing.
hyena-dna
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
med263_wi22_metagenomics_tutorial
Metagenomics tutorial for MED 263
minfi_pipeline
Scripts for running minfi to process Illumina methylation arrays.
MotifData
Motif representation and analysis toolkit in Python
PyDESeq2
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
SeqData
Annotated sequence data
SeqPro
Genomic Sequencing Preprocessing toolkit
sgkit
Statistical genetics toolkit
ushuffle
A useful tool for shuffling biological sequences while preserving the k-let counts