Daniel Cole's repositories
Latent_5HT2A_binding_prediction
Models for prediction of 5HT2A binding affinity from SMILES
.vim
Contains vimrc file and colorschemes
cSpan_webscraper
Downloads congressional record transcripts from senate hearings
dbt-bigquery
dbt-bigquery contains all of the code required to make dbt operate on a BigQuery database.
dbt_artifacts
A dbt package for modelling dbt metadata. https://brooklyn-data.github.io/dbt_artifacts
igvAuto
Contains files to automate genomic viewing using Integrated Genomics Viewer
ML_Numpy_TF_Misc
Various machine learning algorithms implemented in numpy/tensorflow
Mutation_detect_power
Files for calculating power of mutant tests at depths.
simulate_SNPs
Scripts for indexing & editing .fastq files to simulate SNPs
Effect-of-RefBase-on-hetzRead-mapping
Analysis of the influence of the reference base on the frequency of mapped bases at heterozygous sites.
gvcfParsing
Scripts for parsing GATK .gvcf files
mpileup_parser_MA
Parsing & analysis of .mpileup files for a mutation accumulation experiment
MutationAccumulation_PreprocAnalysis
Contains files for Spirodela polyrhiza mutation accumulation experiment
trino-python-client
Python client for Trino