Daniel Cole's repositories

Latent_5HT2A_binding_prediction

Models for prediction of 5HT2A binding affinity from SMILES

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popTE

Scripts for filtering popoolationTE output

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.vim

Contains vimrc file and colorschemes

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cSpan_webscraper

Downloads congressional record transcripts from senate hearings

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dbt-bigquery

dbt-bigquery contains all of the code required to make dbt operate on a BigQuery database.

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dbt_artifacts

A dbt package for modelling dbt metadata. https://brooklyn-data.github.io/dbt_artifacts

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igvAuto

Contains files to automate genomic viewing using Integrated Genomics Viewer

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ML_Numpy_TF_Misc

Various machine learning algorithms implemented in numpy/tensorflow

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Mutation_detect_power

Files for calculating power of mutant tests at depths.

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simulate_SNPs

Scripts for indexing & editing .fastq files to simulate SNPs

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Effect-of-RefBase-on-hetzRead-mapping

Analysis of the influence of the reference base on the frequency of mapped bases at heterozygous sites.

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gvcfParsing

Scripts for parsing GATK .gvcf files

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mpileup_parser_MA

Parsing & analysis of .mpileup files for a mutation accumulation experiment

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MutationAccumulation_PreprocAnalysis

Contains files for Spirodela polyrhiza mutation accumulation experiment

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trino-python-client

Python client for Trino

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