R Script for work
quickly install github R package
C:\Windows\System32\drivers\etc\hosts
git config --global http.sslBackend "openssl"
git config --global http.sslCAInfo C:/Program Files/R/R-3.6.0/library/openssl/cacert.pem
git config --global http.sslCAInfo /mnt/ilustre/centos7users/dna/.env/lib/R/library/openssl/cacert.pem
Build R Package
git config --global user.email "czheluo@gmail.com"
git config --global user.name "czheluo"
Miniconda3 install R
ADD CONDA-FORGE
$ conda config --add channels conda-forge
$ conda config --set channel_priority strict
INSTALL
$ conda search r-base
$ conda create -n R4.2.2
$ conda activate R4.2.2
$ conda install -c conda-forge -r r-base=4.2.2
INSTALL PACKAGES
$conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free
$conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
$conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda
$conda config --set show_channel_urls yes
host
reference
Schulze S, Henkel SG, Driesch D, Guthke R, Linde J. Computational prediction of molecular pathogen-host interactions based on dual transcriptome data. Front Microbiol. 2015;6:65. Published 2015 Feb 6. doi:10.3389/fmicb.2015.00065
Read sequences along the indicated segments of the AB genome. Read counts (in brackets), read length and genomic position are indicated.
igraph for network from expression data
Chord Diagram
barplot
