Cytomine

Cytomine-python-datamining

Cytomine-Datamining package (including image recognition algorithms) in Python

Cytomine-tools

Cytomine toolbox

iipsrv

iipsrv is an advanced high-performance feature-rich image server for web-based streamed viewing and zooming of ultra high-resolution images.

Cytomine-dotslidetools

dotslide2tiff tools

Cytomine-monitoring

Cytomine-sample-webapp

template for a simple web application interacting with Cytomine

Cytomine-software-utils

Base Dockerfiles to create new Cytomine software.

Cytomine-client-autobuilder

Prototype tools to convert json from REST API to a Java client

Cytomine-IRIS

Cytomine Inter-Observer Reliability Study Module

openslide-java

Java bindings to OpenSlide

CBIRestAPI

CBIR server with REST API

CBIRetrieval

pims-plugin-format-example

Example format to implement a PIMS plugin

Rest-api-doc

S_Classify-ML-RandomSubwET-Pred-BI

A Cytomine software for classifying crops with Random subwindows and ExtraTrees (predict)

S_Classify-ML-RandomSubwET-Train

A Cytomine software for classifying crops with Random subwindows and ExtraTrees (training)

S_python_software_example

This is a basic example of an external software pluggable to the Cytomine platform

S_Segment-CV-AdaptThres-Object-BI

Detects objects in a big image using adaptive thresholding, tiling, and union

S_Stats-TermArea

A Cytomine software to compute area and statistics for specified terms in given images and gather results in a CSV file.

Sample-Software-Python