cyniphile / rosalind

practice comp bio problems

Bioinformatics problems from http://rosalind.info/ and the https://stepik.org/course/91751/promo contest implemented in Python and Rust.

• Install Rust.
• Install poetry.
• Build Rust code: cargo b and install Python packages poetry install.
• Build Python-Rust maturin develop --release in the various Rust libs.
• Generate large data: python generate_large_test_data.py.
• Run pytest and cargo criterion to generate benchmarks.