cyclinbox / maf2fas

a single python script for converting multiple alignment file(MAF) to FASTA sequence file.

maf2fas

a single python script for converting multiple alignment file(MAF) to FASTA sequence file.

Usage

python maf2fas.py <maf> [output fasta]
    <maf>           Input maf/maf.gz file
    [output fasta]  Optional. The output file name.
                    If empty, the program will use maf file's name + ".fas" as default name.

(For Linux&maxOS user) Besides, you can also move this script to any directory under system $PATH and rename script file as maf2fas, and add excutable permission(chmod +x maf2fas). Therefore, you can call this program by command maf2fas anywhere in your system.

Features

• Automatic completion sequence by gap("-")
• Output aligned fasta
• Easily deal with gzipped file