Chengran Yang's repositories
activityinequality
Data release for Activity Inequality paper
chromVARmotifs
R package with motifs for use with chromVAR
CSFprotQTLbenchmark
Benchmarking the eight models for mapping a large-scale EUR CSF pQTL dataset varying tools, covariates, and protein-normalization strategies
cshl-singlecell-2017
Single Cell Analysis course at Cold Spring Harbor Laboratory 2017
fiveMinuteStats
A repo of short "vignettes" illustrating statistical concepts
GTExV6PRareVariation
Repository to reproduce analyses from the GTEx V6P Rare Variation Manuscript
Mandalorion
Analysis Pipeline to analyze Nanopore RNAseq data
motifmatchr
Fast motif matching in R
Plasma2omic2pops
Scripts for the manuscript "European and African stratified plasma protein-QTL and metabolite-QTL analyses identify ancestry-specific T2D effector proteins and metabolites"
Publications
Scripts used in published papers
scRNAseq-Malaria
Codes associated with the Poran et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria parasites".
systemsgenetics
Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
t81_558_deep_learning
Washington University (in St. Louis) Course T81-558: Applications of Deep Neural Networks
TENxGenomics
Interface to 10x Genomics' 1.3 m single cell data set
wordcloud2
R interface to wordcloud for data visualization.