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Chinmay Raut (cvraut)

cvraut

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Company:Speliotes Lab

Location:Ann Arbor, MI

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Chinmay Raut's repositories

whecho

linux echo but with webhooks! âš“

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hackuci-monopoly

hacks monopoly

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UKB_500K_exome_QC

Some scripts to run QC on the UK Biobank 500k exome data

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jupyter_examples

A collection of example notebooks for the Speliotes Lab

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viLDA

varitional inference Latent Dirichlet Allocation

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504GitExercise

Code to demonstrate simple use of github

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BIDS-TP_Hackathon_2023

2023 BIDS mini-hackathon project

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Bioinf_prelims

Repository to contain and organize work for my PhD prelims

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BS699_P4

Code for the BS699 rnaseq experiment project

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crauttools

Series of R functions that help craut work in R

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iBAG

An R package for the IBAG library

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Boruta-Shap

A Tree based feature selection tool which combines both the Boruta feature selection algorithm with shapley values.

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Clin_Trial_NLP

2 kids playing with lives & code

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craut_linux_env

A list of files and utilities to make linux environments more craut development friendly

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dominion_simulations

A repo to study certain interesting dominion decisions

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FAVOR_setup

Some steps and utilities I used to setup the FAVOR database on a private system

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gene_scraper

some scripts to scrape summaries of genes

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Gruntled

video-recording browser extension

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gruntled-backend

This is the backend repo for the gruntled project

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iBAG_dep

R/Shiny app for integrative Bayesian analyses of genomics models/ BayesRX Group

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iBAG_supplementary

Supplementary materials & tutorials for iBAG

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ibagshiny

A R shiny web app as an example/interface to the iBAG framework.

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markdownslides

A "markdown-first" approach for generating beautiful browser-based slides easily. Based on Reveal.js and Reveal-Jekyll.

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SAIGE

Development for SAIGE and SAIGE-GENE(+)

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slalom_test

I want to test the genetic fine-mapping package [SLALOM](https://github.com/mkanai/slalom) & perhaps extend it

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sshwifty

Web SSH & Telnet (WebSSH & WebTelnet client) 🔮

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STAARpipeline

An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline

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TCGA-notebooks

A series of python notebooks outlining how to extract and validate data from TCGA

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vscode-chatgpt

A Visual Studio Code extension to support ChatGPT. The extension is pair-programmed with ChatGPT.

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wrobel-template

template website from Jessica Wrobel's personal website

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