Beast code in Giters

Charles Vaske's repositories

libdai

clone of Joris Mooij's libDAI at http://people.kyb.tuebingen.mpg.de/jorism/libDAI/

Language:C++GPL-2.06 10

yubikey-scripts

Personal experiments for Yubikey 4 (and possibly NEO)

Language:Shell5 10

couchapp

Utilities to make standalone CouchDB application development simple

Language:PythonApache-2.01 10

demuxlet

Genetic multiplexing of barcoded single cell RNA-seq

Language:C++Apache-2.01 10

jobTree

Pipeline management software for clusters

Language:PythonMIT1 10

miniwdl-pre-commit

Plugin for pre-commit to check WDL files with miniwdl

Language:PythonMIT1 10

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Language:PythonMIT000

chatlab

⚡️ Fast Experimentation 🧪 with OpenAI Chat Function Calling

Language:Jupyter NotebookNOASSERTION000

gatk4-GenotypeGVCFs-nf

Joint calling of gVCF, following GATK4 Best Practices

Language:NextflowGPL-3.0000

gatk4-HaplotypeCaller-nf

GATK4 HaplotypeCaller step, in gVCF mode, first step for subsequent whole cohort Joint Genotyping.

Language:NextflowGPL-3.0000

ggseqlogo

Publication-quality sequence logos in R

Language:R000

GLIMPSE

Low Coverage Calling of Genotypes

Language:C++MIT000

gnupg-pkcs11-scd

PKCS#11 GnuPG SCD

Language:CNOASSERTION000

how-to

A set of quick 1-page how-to guides. These are really just notes that I write for myself, to aid my own memory and learning.

010

IsoApplet

A Java Card PKI Applet aiming to be ISO 7816 compliant

Language:JavaGPL-3.0020

miniwdl

Workflow Description Language developer tools & local runner

MIT000

node-gyp

Node.js native addon build tool

MIT000

ollama

Get up and running with Llama 2, Mistral, and other large language models.

MIT000

Paradigm

PAthway Representation and Analysis by Direct Inference on Graphical Models

Language:C++010

sonLib

Small general purpose library for C and Python with focus on bioinformatics.

Language:CMIT010

wdl

Workflow Description Language - Specification and Implementations

BSD-3-Clause000

yubico-piv-tool

Command line tool for the YubiKey PIV application

Language:CBSD-2-Clause020