cvanderaa

scPROTEIN

LaPreprint

📝 A nicely formatted LaTeX preprint template

singlecell_proteomics

nPOP

Code for analysis from "Exploring functional protein covariation across single cells using nPOP"

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

maker

Makefile for R packages

Lymphocytes1

bioc-intro

Bioconductor data science introduction

bioc-rnaseq

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor

SCeptre

SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.

MsCoreUtils

Core Utils for Mass Spectrometry Data

MultiAssayExperiment

Bioconductor package for management of multi-assay data

SingleCellMultiModal

Single Cell multimodal data scripts for downloading datasets

ThrivingInBioinformatics

SampleQC

Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data

tidySingleCellExperiment

Brings SingleCellExperiment objects to the tidyverse

SCoPE2

rols

An R package to query EBI's Ontology Lookup Service (OLS)

BiocStickers

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

shinyAppDemo

A demo shiny app inside a package

data-science-seminar

Topics In Data Science and Bioinformatics

conquer_comparison

Code for evaluation of differential expression methods in single-cell RNA-seq data

covid-19-bh20

COVID-19 Biohackathon April 5-11 2020

zinb_analysis

Data analysis and simulations for the ZINB-WaVE paper

parblogdown

Parallel version of blogdown forked from rstudio/blogdown

ten-years

Ten Years Reproducibility Challenge

mzR

This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)

scDblFinder

Methods for detecting doublets in single-cell sequencing data

workflowr

Organize your project into a research website

countsimQC

countsimQC - Compare characteristic features of count data sets