Alexander Cumberworth's repositories
ActinFriction.jl
A Julia package for simulating the dynamics of passively crosslinked actin rings.
LatticeDNAOrigami
A program for running Monte Carlo simulations of a lattice model of DNA origami, especially for studying its self-assembly process.
LatticeDNAOrigami_old
Simulation tools for lattice DNA origami models with domain-level resolution.
actinfrictionpy
Python package for the dynamics analysis of the paper "Constriction of actin rings by passive crosslinkers".
actinrings
Python package for the equilibrium analysis of the paper "Constriction of actin rings by passive crosslinkers".
ActinRingsMC.jl
A Julia simulation package with functions for running adaptive umbrella sampling Monte Carlo simulations of crosslinked actin rings.
biblib
Simple, faithful BibTeX parser and algorithms for Python 3
BlobCrystallinOligomer
Modeling tools for simulations of oligomers consisting of very-coarse-grained representations of Alpha-B Crystallin.
elastic-rings
A program for solving geometrically non-linear elastic rings with the deal.II finite element method (FEM) library.
origamipy
Python package for analysis, visualization, and support for the LatticeDNAOrigami simulation program.
caulobacter-crescentus-summary
A summary of the cell cycle in Caulobacter crescentus.
continuum-mechanics-and-fem-notes
Notes on Continuum mechanics, especially elasticity, and the finite element method (FEM).
dealii
The development repository for the deal.II finite element library.
latex-templates
Templates for commonly created latex document types.
matplotlib-label-lines
Label line using matplotlib.
matplotlibstyles
Styles and helper functions for matplotlib.
ToyMD
MD program for understanding simulation fundamentals by implementation
ubcdiss
UBC Dissertation Template for LaTeX