cudmore

SanPy

SanPy is software for whole-cell current clamp analysis.

PyMapManager

Longitudinal image analysis with online editing and sharing.

bImPy

A multi-dimensional image viewer and annotation tool

brightest-path-lib

Path-finding algorithms to find the brightest path between points in an image.

pie

A Raspberry Pi Controlled Experiment (PiE). See documentation at https://cudmore.github.io/pie-doc

iot-winter-2022

A class on the IoT where we both learn about it and build our our.

iot-fall-2023

UC Davis Freshman Seminar

pie-analysis

protocols

Collection of lab protocols

Adafruit_IO_Arduino

Arduino library to access Adafruit IO from WiFi, cellular, and ethernet modules.

analyze-flow

Blood flow analysis from line scans

bImPy-Docs

Documentation for bImPy

cudmore.github.io

This is a blog by Robert Cudmore

iotserver

lindensutter

How to manual for Linden Sutterm 2P microscope

load-heka-python

Load HEKA .dat files into python

napari

napari: a fast, interactive, multi-dimensional image viewer for python

napari-dapi-ring-analysis

napari-mm

Napari plugin to load and visualize 3D image time series saved by Map Manager

pie-doc

PiE server documentation. Browse this documentation at https://cudmore.github.io/pie-doc

pyABF

A Python interface for ABF files

pyinstaller

Freeze (package) Python programs into stand-alone executables

python_app_mac_app_store

cudmore trying to distribute a macOS app and failing

read-roi

Read ROI files .zip or .roi generated with ImageJ.

saNode

saNode image analysis

SanPy-Dash

SanPy-Dash

sanpy-data

SanPy Data

SanPy-Docs

ShapeAnalysisPlugin

For user documentation, see: https://cudmore.github.io/ShapeAnalysisPlugin/

smMicrotubule

Smooth Muscle Microtubule Analysis