ctr26

pytorch_tutorial

pyTorch demo(s)

bioimage_embed

pydeconv

Python package for scalable micrograph deconvolution with spatially varying point spread functions

benchmark_VAE

Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)

bioimage_phenotyping

DL4MicEverywhere

Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images

dotfiles

mask-vae

nuclear_phenotyping

torch-em

Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.

bia-agent

BioImage Archive local submission assistant

bia-integrator

bioimage_embed-old-

gpt-migrate

Easily migrate your codebase from one framework or language to another.

hypha-helm-charts

hypha-k8s-eks

ivy

The Unified Machine Learning Framework

KymoButler

A software package that analyses (particle) kymographs

LIVECell

microscopeimagequality

mordred

a molecular descriptor calculator

napari

napari: a fast, interactive, multi-dimensional image viewer for python

pycytominer

Python package for processing image-based profiling data

richardson_lucy_early_stopping

scientific-python-template

scipy

SciPy library main repository

spec-bioimage-io

Specification for the bioimage.io model description file.

vision

Datasets, Transforms and Models specific to Computer Vision

voxel2mesh

Voxel2Mesh: 3D Mesh Model Generation from Volumetric Data

ZeroCostDL4Mic

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy