ctlee

gamer

Geometry-preserving Adaptive Mesher

casc

Colored Abstract Simplicial Complex Library

BioChemCoRe-2018

Biology and Chemistry Computational Research

bccgc4

BioChemCoRe D3R Grand Challenge 4 Team Repository

Stellar

A Tetrahedral Mesh Improvement Program

cpptraj

Biomolecular simulation trajectory/data analysis.

ddcMD

A fully GPU-accelerated molecular dynamics program for the Martini force field

langevin-milestoning

1D Langevin Dynamics Simulation Engine

MemSurfer

MemSurfer is a software tool to compute bilayer membrane surfaces.

nglview

Jupyter widget to interactively view molecular structures and trajectories

SEEKR

SEEKR is a suite of open-source scripts and tools designed to enable researchers to perform multiscale computation of the kinetics of molecular binding, unbinding, and transport using a combination of molecular dynamics, Brownian dynamics, and milestoning theory.

biblib

Simple, faithful BibTeX parser and algorithms for Python 3

calculate-bilayer-power-spectrum

ctl-phd-thesis

Latex source for CTL's PhD thesis

diffusion_autocorrelation

gamer_tutorials

geometry-central

A general-purpose library for applied geometry

Mem3DG

3-D computational model for lipid membrane

membrane-curvature

Mirror of https://github.com/ctlee/membrane-spectral-analysis for legacy purposes

membrane-curvature-mda

MDAnalysis tool to calculate membrane curvature.

membrane-spectral-analysis

Compute fluctuation spectra of biological membranes

netcdf-cxx4

Official GitHub repository for netCDF-C++ libraries and utilities.

pymem3dg-feedstock

A conda-smithy repository for pymem3dg.

pypoisson

Poisson Surface Reconstruction Python Binding

SSCP_2018

stubs

swc_mesher

Creates a Blender Object from an SWC formatted file