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ctlab / fgsea

Fast Gene Set Enrichment Analysis

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are there p-value calculated for each leading edge gene?

Leran10 opened this issue · comments

commented

Hi,

I used fgsea to calculate enrichment. I want to know if each leading edge gene also has a p-value or adjust p-value that I can fetch and make plot with it?

Thanks!
Leran

commented

Not sure what you mean. All of the genes usually have differential expression p-values, which is normally done before GSEA. FGSEA doesn't add any additional gene-level p-values, only pathway-level.

commented

Thanks for your reply! that's what I thought just want to confirm!