Christopher Boughter's repositories
auto_vina_analysis
In this code, I create a high throughput Autodock Vina pipeline for testing the docking of a large array of lipid-like molecules in an MHC-like molecule
CDR_bioinformatics
Trying to automatically pull out CDR loop sequences from a given antibody full sequence. Fairly rudimentary for now, but it works! Compares well to human selected CDR loop sequences.
pre_MEMSEAL
A repository for storing and documenting pre-processing scripts for various 'Omics pipelines in association with the MEMSEAL DARPA project.
string_method_automate
So Benoit Roux wants to move away from using DHAM to optimize an initial string path for calculating the binding free energy of protein-protein interactions... Here I try to do that
abeta_histogram
Create a script to read in AFM data (made originally for ABeta40 data analysis) and plot it in a histogram/quantitate that histogram. Made 3 versions of it and figured this is "git version manager"
AIMS_manuscripts
This is a repository for the explicit replication of AIMS analysis published in a range of manuscripts
basketstats
Here is a rough draft of everything I'm working on for this new program
boughter.github.io
Creating a repository to host my first every personal website. Never done this before, but it might be a good skill to have.
manuscript_md_analysis
An open repository containing MD simulation analysis scripts used for a few manuscripts
ML_practice
Trying to make a classifier of a limited dataset (for now). Mostly for practice, but may become functional sometime.
countASAP
An easy to use python-based package for generating ASAPseq Count Matrices from FASTQ files
OverUnderProject
This is my first big attempt at creating a ML Model to predict where regular season NFL games will be over/under the predicted score
PRESTO
An automated pipeline for the analysis of TCR-pMHC structures deposited to the PDB
sim_visualization
Let's see if I can get a nice folder that stores all of the different ways that I visualize data from my protein-protein simulations
testing12
Let me just try out how to do this thing