Beast code in Giters

Chris Rosenthal's repositories

medirect

multiprocessed ncbi edirect

Language:PythonGPL-3.05 3 6

csvpandas

Interface to manipulate csv files as Pandas DataFrames.

Language:PythonGPL-3.03 4 1

taxmagick

Tools for managing ncbi taxonomic data

Language:PythonGPL-3.01 30

alnvu

Reformat and condense multiple sequence alignments to highlight variability

Language:Python010

aws_batch

Moves data to and from AWS Batch system and monitors logs

Language:PythonGPL-3.0030

bioinformatics

Bioinformatics scripts and notes

Language:ShellMIT020

bioy

Language:UnrealScriptGPL-3.0020

dnaJ

Creation of a dnaJ reference database

Language:PythonGPL-3.0020

moose

dna/rna alignment classifier

Language:PythonGPL-3.005 3

rrat

Ribosomal RNA Allele Tree

Language:PythonGPL-3.0030

DendroPy

A Python library for phylogenetic scripting, simulation, data processing and manipulation.

Language:PythonNOASSERTION020

docker

Language:C++NOASSERTION000

docker-kraken2

Kraken2 with reference database

Language:Dockerfile010

dotfiles

My env configs

Language:Vim Script030

epa-ng

Massively parallel phylogenetic placement of genetic sequences

Language:C++AGPL-3.0010

explate

Generic Python experiment analysis template.

Language:Emacs Lisp000

infernal_docker

http://eddylab.org/

Language:Dockerfile030

moose_chrome

Chrome extension for Moose Classifier

Language:JavaScriptGPL-2.0010

resume

My résumé

Language:TeX020

scons_batch

SCons Aws Batch plugin

Language:PythonGPL-3.003 1

sra_submission

SRA, Bioproject and Biosample walk through with accompanying scripts

Language:Python030

ya16sdb-dash

Dash app for the ya16sdb reference database

Language:Python020