cropsinsilico

yggdrasil

A framework for connecting scientific models across languages and scales.

SorghumVoxelCarving

Implementation of Sorghum 3D reconstruction and skeletonization.

jupyterlab_nodeeditor

catherder

A tool for syncing different project management tools

CiS2021-hackathon

Materials for the Hackathon at the 2021 Crops in Silico Symposium & Workshop

Soybean-BioCro

ODE_FBA_Photosynthesis2021

Scripts supporting the soon-to-be-submitted ODE-FBA photosynthesis work

ProtTranslationModel_CO2

AIFoundry-2023

Materials used in the yggdrasil demonstration at the AI Foundry short course in 2023

C3-metabolic-and-leaf-model

deploy-dev

Collection of scripts used for deploying WT locally

ePhotosynthesis

ePhotosynthesis_C

example-fakemodel

A fake model for use in testing and examples.

FSPM2020_yggdrasil_workshop

Materials for the FSPM2020 yggdrasil workshop

GRN_Model

hothouse

jupyterlab_cis

Crops in Silico JupyterLab extension

model_integrations

A central location to store materials for model integrations that are publicly available.

nodeeditor-controls

python-rapidjson

Python wrapper around rapidjson

r-base-feedstock

A conda-smithy repository for r-base.

r-reticulate-feedstock

A conda-smithy repository for r-reticulate.

rapidjson

A fast JSON parser/generator for C++ with both SAX/DOM style API

Soybean-Sensitivity

tissue-specific-FBA-models

Visualization

Repository for assets related to geometry and image creation

yggdrasil-feedstock

A conda-smithy repository for yggdrasil.

yggdrasil_models

Catalog of models registered via the submission form located at https://yggdrasil-models.herokuapp.com/

yggdrasil_models_test

Repo for testing https://yggdrasil-models.herokuapp.com/ submission