ChIP-seq processing pipeline
An R package for anlaysis of ChIP-seq and other functional sequencing data. Please see package homepage for details.
Requirements
A unix-flavored OS with R and Boost C++ installed.
Installation
You can use modtools to install SPP:
require(devtools)
devtools::install_github('hms-dbmi/spp', build_vignettes = FALSE)
Alternatively, download a .tar.gz containing the latest release and use the standard R installation command, e.g.:
R CMD INSTALL spp_1.13.tar.gz
Note: if Boost libraries are installed in a non-standard location, please specify the location in a BOOST_ROOT environment variable prior to running the installation.
export BOOST_ROOT=/path/boost_1_58_0/