LMann's starred repositories
genomescope2.0
Reference-free profiling of polyploid genomes
RepeatMasker_Nextflow
Nextflow script for running RepeatMasker on a cluster
Awesome-GPTs
Curated list of awesome GPTs đź‘Ť.
shell-novice
The Unix Shell
UnsupervisedPeakCaller
Peak calling for ATAC-seq data using contrastive learning on biological replicates
ecc_caller
ecc_caller is a pipeline designed to take Illumina NovaSeq paired end sequencing reads generated from isolated circular DNA and call eccDNA forming regions.
data_to_viz
Leading to the dataviz you need
RepeatMasker
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
ECCsplorer
The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read data of amplified circular DNA.
zotero-night
Night theme for Zotero UI and PDF
StainedGlass
Make colorful identity heatmaps of genomic sequence