crimBubble

followers

following

stars

@molbio-dresden

https://tu-dresden.de/mn/biologie/botanik/molbio/die-professur/staff

LMann's starred repositories

signalAlign

HMM-HDP models for MinION signal alignments

Language:CMIT4500

LTRpred

De novo annotation of young retrotransposons

Language:RGPL-2.04500

RIDER

Reproducible Scripts for RIDER Annotation

Language:UnrealScript100

SPLITREADER

Split-read pipeline for the identification of non-reference TE insertions with TSDs

Language:ShellGPL-3.02300

SalmonTE

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

Language:Jupyter NotebookGPL-3.08100

STEAK

Specific Transposable Element Aligner (HERV-K)

Language:C++1600

oneliners

Useful bash one-liners for bioinformatics.

DnaFeaturesViewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

Language:PythonMIT58200

seqtk

Toolkit for processing sequences in FASTA/Q formats

Language:CMIT136200

flexidot

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

Language:PythonLGPL-2.18900

LTR_retriever

LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.

Language:PerlGPL-3.017800