Giters
LMann (crimBubble)

crimBubble

Geek Repo

2

followers

15

following

71

stars

Company:@molbio-dresden

Home Page:https://tu-dresden.de/mn/biologie/botanik/molbio/die-professur/staff

Twitter:@crim_Bubble

Github PK Tool:Github PK Tool

LMann's starred repositories

BIDS-training-2024

Language:Jupyter NotebookLicense:CC-BY-4.0Stargazers:9Issues:0Issues:0

genomescope2.0

Reference-free profiling of polyploid genomes

Language:RLicense:Apache-2.0Stargazers:96Issues:0Issues:0

TEtrimmer

TEtrimmer: a novel tool to automate manual curation of transposable elements

Language:PythonLicense:GPL-3.0Stargazers:52Issues:0Issues:0

RepeatMasker_Nextflow

Nextflow script for running RepeatMasker on a cluster

Language:PerlStargazers:3Issues:0Issues:0

windows

Windows inside a Docker container.

Language:ShellLicense:MITStargazers:15905Issues:0Issues:0

MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

Language:CLicense:GPL-3.0Stargazers:1319Issues:0Issues:0

dante_ltr

Language:RLicense:GPL-3.0Stargazers:9Issues:0Issues:0

Awesome-GPTs

Curated list of awesome GPTs đź‘Ť.

License:GPL-3.0Stargazers:2977Issues:0Issues:0

shell-novice

The Unix Shell

Language:ShellLicense:NOASSERTIONStargazers:373Issues:0Issues:0

EarlGrey

Earl Grey: A fully automated TE curation and annotation pipeline

Language:PythonLicense:NOASSERTIONStargazers:126Issues:0Issues:0

UnsupervisedPeakCaller

Peak calling for ATAC-seq data using contrastive learning on biological replicates

Language:PythonStargazers:8Issues:0Issues:0

dante

Domain based annotation of transposable elements

Language:RoffLicense:GPL-3.0Stargazers:18Issues:0Issues:0

seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Language:GoLicense:MITStargazers:1250Issues:0Issues:0

winutil

Chris Titus Tech's Windows Utility - Install Programs, Tweaks, Fixes, and Updates

Language:PowerShellLicense:MITStargazers:17364Issues:0Issues:0

Bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

Language:C++License:GPL-3.0Stargazers:576Issues:0Issues:0

spades

SPAdes Genome Assembler

Language:C++License:NOASSERTIONStargazers:720Issues:0Issues:0

circdna

Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.

Language:PythonLicense:MITStargazers:26Issues:0Issues:0

Unicycler

hybrid assembly pipeline for bacterial genomes

Language:C++License:GPL-3.0Stargazers:537Issues:0Issues:0

ecc_caller

ecc_caller is a pipeline designed to take Illumina NovaSeq paired end sequencing reads generated from isolated circular DNA and call eccDNA forming regions.

Language:PythonStargazers:6Issues:0Issues:0

data_to_viz

Leading to the dataviz you need

Language:HTMLLicense:MITStargazers:962Issues:0Issues:0

Inpactor2

Inpactor2: LTR retrotransposon detector and classificator using Deep Learning

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:17Issues:0Issues:0

megahit

Ultra-fast and memory-efficient (meta-)genome assembler

Language:C++License:GPL-3.0Stargazers:576Issues:0Issues:0

CIAlign

Language:PythonLicense:MITStargazers:110Issues:0Issues:0

MCHelper

MCHelper: An automatic tool to curate transposable element libraries

Language:PythonLicense:GPL-3.0Stargazers:26Issues:0Issues:0

RepeatMasker

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

Language:PerlLicense:NOASSERTIONStargazers:216Issues:0Issues:0

ECCsplorer

The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read data of amplified circular DNA.

Language:PythonLicense:GPL-3.0Stargazers:18Issues:0Issues:0

Logolas

R package for Enrichment Depletion Logos (EDLogos) and String Logos

Language:RLicense:GPL-3.0Stargazers:27Issues:0Issues:0

zotero-night

Night theme for Zotero UI and PDF

Language:SCSSLicense:GPL-3.0Stargazers:2306Issues:0Issues:0

rich-msa

A Rich renderable for viewing Multiple Sequence Alignments in the terminal.

Language:PythonLicense:MITStargazers:77Issues:0Issues:0

StainedGlass

Make colorful identity heatmaps of genomic sequence

Language:HTMLLicense:MITStargazers:93Issues:0Issues:0