crhisto

Crhistian Cardona's repositories

DecoFlex

DecoFlex deconvolution method for Omic data implemented as DecoFlexR

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Biobase

Biobase repository: https://github.com/Bioconductor/Biobase with support for sparse matrix

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CRC_organoids_and_fibroblasts_notebook

Deconvolution of CRC in organoid and fibroblast bulk data identifying epithelial cell types proportions

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MeDeCom

Decomposition of heterogeneous DNA methylomes

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MuSiC

Multi-subject Single Cell Deconvolution

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Implementation of the Non-negative Multiple Matrix Factorization (NMMF) algorithm proposed in Takeuchi et al, 2013 with some modifications. There is a python native version NMMFlexPy and a R wrapper NMMFlexR

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SCDC

SCDC project, originally on: https://github.com/meichendong/SCDC. Support sparse matrix among other additions.

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thymus_NPM-ALK_notebook

R Notebook with scripts for running the deconvolution of thymus bulk data identifying T-cell proportions

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xbioc

Project xbioc originally on: https://github.com/renozao/xbioc with support for sparse matrix

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