R package containing instructional materials for using GoogleGenomics Bioconductor and bigrquery packages.
Depending upon how up-to-date your installation of Bioconductor is, the setup commands below take quite a long time. See http://googlegenomics.readthedocs.org/en/latest/workshops/bioc-2015.html for a faster way to get started.
To install:
# Install BiocInstaller.
source("http://bioconductor.org/biocLite.R")
# OPTIONAL: see http://www.bioconductor.org/developers/how-to/useDevel/
# useDevel()
# Install devtools which is needed for the special use of biocLite() below.
biocLite("devtools")
# Install the workshop material.
biocLite("googlegenomics/bioconductor-workshop-r", build_vignettes=TRUE, dependencies=TRUE)
View and run the vignettes.
help(package="GoogleGenomicsBioc2015Workshop")