Carmen Webster's repositories
Language:Python000
FAIR_test
Seminar 20240523
MIT000
run_admixture
A series of scripts that calculate and plot admixture and cross validation statistics for K=1-15.
principal_components
A series of documents that call VCFtools (Danecek et al., 2011) and Plink 1.9 beta to calculate principal components for a given VCF and plot the results.
webster_thesis
Scripts developed for parsing and analyzing genetic variation in a specific gene family with VCFs and FASTAs.
Language:Python000
VCF_quality_filter
The following scripts and commands calculate and display statistics for a raw VCF, then filters the VCF for quality, depth, and missingness at given thresholds.
Language:R000