cpolano

BayesASE

Bayesian analysis of allele specific expression

asciidoc-highlight

Highlight for the Asciidoc language (gedit and notepad++)

mito

The mitosheet package, trymito.io, and other public Mito code.

dna-3d-engine

3d engine implementation in DNA code!

mauve

A genome alignment and visualization system

base16-notepad-plus-plus

Notepad++ styles based on Chris Kempson's Base16 colour scheme

biojava-tutorial

:book::books:An introductory tutorial for BioJava

biosql

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

cadnano2

PyQt4 version of cadnano with Maya integration

cadnano2.5

PyQt5 version of cadnano

cadnano2

Cadnano2

bioperl-live

Core BioPerl 1.x code

biopython

Official git repository for Biopython (originally converted from CVS)

Krona

Interactively explore metagenomes and more from a web browser.

bcftools

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data