Charlie Pauvert's starred repositories
FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
tidyexplain
🤹♀ Animations of tidyverse verbs using R, the tidyverse, and gganimate
row-oriented-workflows
Row-oriented workflows in R with the tidyverse
github-repo-stats
GitHub Action for advanced repository traffic analysis and reporting
prepare-for-cran
A Collaborative list of things to know before submitting to CRAN
engineering-shiny-book
Engineering Production-Grade Shiny Apps — Published in the R Series
biolink-model
Schema and generated objects for biolink data model and upper ontology
perfect-bioinformatic-tools
What should perfect bioinformatic tools be like?
targets-shiny
Example Shiny app containing a targets pipeline.
trelliscope
R Trelliscope package
quarto-docker-examples
Quarto Examples with Docker
ELIXIR-TrP-FAIR-training-handbook
Train-the-trainer handbook for making training materials FAIR
MetadataStandards
The primary objective of this GitHub page is to serve as a centralized repository for existing (meta)data standards.
prodigal-pyrodigal-comparison
A Python script for the comparison of Prodigal and Pyrodigal predictions.
miiid-schema
A metadata schema for the Minimum Information about Intermicrobial Interaction Data (MIIID) using LinkML
maldipickr
Dereplicate And Cherry-pick Mass Spectrometry Spectra
validamiiid
Edit and validate description of intermicrobial interaction data in an interactive fashion. Validation is done against the MIIID metadata schema.
tikz-microbio
A set of tikz drawings for microbiology-related figures