covidestim

covidestim

Geek Repo

Tools to estimate true incidence and Rt of SARS-CoV-2, along with daily nowcasts for all 50 states

Location:New Haven, CT / Cambridge, MA

Home Page:https://covidestim.org

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covidestim's repositories

covidestim

Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States

covidestim-sources

Data pipeline for covidestim, + analysis of revisioning in public COVID data

data-archive

Repository with archived output data from analyses using covidestim model runs

api_docs

How to use our public API

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cdc-vaccine-data

Daily scrape of CDC county-level vaccinations data

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covid-dash

Next.js/d3/React website displaying data from Covidestim model results

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covidestim-products

Results and setup of daily covidestim runs, as well as other research experiments

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dailyFlow

Nextflow workflow for daily county/state runs

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dbstan

Effortlessly move RStan results into/out of your database

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idc

Input data classifier for identifying reporting system state

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openconnect-proxy

docker openconnect proxy

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webworker

Container with scripts for taking model results and formatting them for public distribution

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targets-stan

An example project to validate a Stan model in a targets pipeline

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vaccineAdjust

R package for doing pre-model vaccine adjustment

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