covidestim

covidestim

Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States

covidestim-sources

Data pipeline for covidestim, + analysis of revisioning in public COVID data

data-archive

Repository with archived output data from analyses using covidestim model runs

api_docs

How to use our public API

cdc-vaccine-data

Daily scrape of CDC county-level vaccinations data

covid-dash

Next.js/d3/React website displaying data from Covidestim model results

covidestim-products

Results and setup of daily covidestim runs, as well as other research experiments

dailyFlow

Nextflow workflow for daily county/state runs

dbstan

Effortlessly move RStan results into/out of your database

idc

Input data classifier for identifying reporting system state

internal-dashboard

openconnect-proxy

docker openconnect proxy

webworker

Container with scripts for taking model results and formatting them for public distribution

omicron-testing

targets-stan

An example project to validate a Stan model in a targets pipeline

vaccineAdjust

R package for doing pre-model vaccine adjustment