Cortes-Ciriano lab (EMBL-EBI)

SComatic

A tool for detecting somatic variants in single cell data

savana

Somatic structural variant caller for long-read data

ReConPlot

telomere_fusions

Code to call telomere fusions using DNA sequencing data

ClonalSim

DeMethify

DeMethify is a partial-reference based methylation deconvolution algorithm that uses a weighted constrained version of an iteratively optimized negative matrix factorization algorithm.

MMRd_immunogenicity

CancerGenomicsCourse_EMBL-EBI

osteosarcoma_evolution

Code for the analysis of the mechanisms underpinning osteosarcoma genome complexity and evolution

R_utilities

R common ggplot2 theme and popular colour palettes for lab usage

TelFusDetector