Matthew D. Young's repositories
scKidneyTumors
Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"
cellSignalAnalysis
Identify major cellular signals in bulk transcriptomes
WebGlacier
A basic web interface to manage your Amazon Glacier account
markdown2Mathjax
A library to allow the use of markdown and mathjax at the same time, utilizing the markdown2 python library.
alleleIntegrator
R package to generate allele specific counts for scRNA data and use it to identify cancer cells
ambientRNA_paper
Code necessary to reproduce results of ambient RNA (SoupX) paper.
inactiveXX
Detect X-inactivation status in single cell transcriptomes
dediffPaperCode
Code needed to reproduce paper "Transcriptional signals of transformation in human cancer"
gadget2-AccretionDiscs
A modified version of the gadget2 SPH code updated for use on accretion discs.
scihtmlatex
Converts html to latex for use with sciteit.com. Apapted from this project http://directory.fsf.org/wiki/HTMLatex
sciteit-i18n
translation files for sciteit
XiPaperCode
Code necessary to create X-inactivation paper
AutoWatermark
Bash script to add a text based watermark to a group of images.
constantAmateur.github.io
Code to generate homepage with git pages
dndscv
dN/dS methods to quantify selection in cancer and somatic evolution
RLogBook
R package to log plots
scQC
My overly obsessive sanity checks for single cell (and other) data
TargetedCN
A R package to infer copy number states from targeted capture data.
voluptuous
Voluptuous, despite the name, is a Python data validation library.