constantAmateur

SoupX

R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data

scKidneyTumors

Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"

cellSignalAnalysis

Identify major cellular signals in bulk transcriptomes

MCVR

Implementation of molecular cross validation technique to determine ideal number of PCs for scRNA-seq in R

WebGlacier

A basic web interface to manage your Amazon Glacier account

alleleIntegrator

R package to generate allele specific counts for scRNA data and use it to identify cancer cells

markdown2Mathjax

A library to allow the use of markdown and mathjax at the same time, utilizing the markdown2 python library.

ambientRNA_paper

Code necessary to reproduce results of ambient RNA (SoupX) paper.

inactiveXX

Detect X-inactivation status in single cell transcriptomes

MYRtsne

A modification of Rtsne to output some extra tSNE properties

dediffPaperCode

Code needed to reproduce paper "Transcriptional signals of transformation in human cancer"

gadget2-AccretionDiscs

A modified version of the gadget2 SPH code updated for use on accretion discs.

myfig

Easily publish figures to your private web server

scihtmlatex

Converts html to latex for use with sciteit.com. Apapted from this project http://directory.fsf.org/wiki/HTMLatex

sciteit

The code used to create sciteit.com.

sciteit-i18n

translation files for sciteit

XiPaperCode

Code necessary to create X-inactivation paper

AutoWatermark

Bash script to add a text based watermark to a group of images.

constantAmateur.github.io

Code to generate homepage with git pages

dndscv

dN/dS methods to quantify selection in cancer and somatic evolution

logTrim

PanCanStem_Web

responsive

RLogBook

R package to log plots

scQC

My overly obsessive sanity checks for single cell (and other) data

TargetedCN

A R package to infer copy number states from targeted capture data.

voluptuous

Voluptuous, despite the name, is a Python data validation library.