commons-research's repositories
ms-annotator
A Python package to proceed to the annotation of mass spectra with chemical structures
coleus-project
Coleus project Datatreatment Audrey
common_dws_public_storage
Serve files not hosted on the Dendron
commons-dws-public
COMMONS Lab Public Dendron Workspace
cookiecutter-snekpack
🍪 A cookiecutter package for an enlightened python package
isdb_preparator
Scripts to prepare structures for frag with cfm
LinkedDataHub
The Knowledge Graph notebook. Apache license.
matchms
Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.
metabolite_annotator
A Python package to proceed to metabolite annotation from mass spectrometry data
MINE-Database
Metabolic In silico Network Expansion (MINE) Database Construction and DB Logic
report-template
A generic report template
smile_to_ms
produces MS spectras from the SMILE.
vimms
A framework to develop, test and optimise fragmentation strategies in LC-MS metabolomics
vscode-sparql-notebook
Visual Studio Code SPARQL Notebook Extension
wikidataqidlabels
VS Code extension to show a description of the entity in Wikidata on hover
zen
zen is a Python library that provides a simple and intuitive way to interact with Zenodo. With zen, you can automate and streamline various tasks related to creating, managing, and exploring Zenodo depositions, all within your Python environment.
commons-server-git-fetcher
A script to periodically fetch git repos of interest
epicoccum-nigrum-metabolomics
A repo for the Epicoccum nigrum metabolomics and NP isolation paper (Azzollini)
lotus-structural-expansion
Master thesis in bioinformatics - data driven solution to annotate new proteins
microcosmics
A dump repo for the microcosmics project
reaction-viewer-gadget
A .js gadget to display reaction SMIRKS and SMARTS on Wikidata