Combiz Khozoie's repositories
nf-core-scflow
Complete analysis workflow for single-cell/nuclei RNA-sequencing data.
scFlow_Supplementary
Supplemental Data for the scFlow Manuscript
scFlow-Workshop
Materials for the scFlow Workshop
ckaidocker
Docker Configuration for AI in Python
ckrdocker
Docker Configuration for Data Science / Bioinformatics in R
configs
Config files used to define parameters specific to compute environments at different Institutions
d3-ass1-plot
Custom D3.JS plot of epigenetic data at the ASS1 gene promoter
dagster
An orchestration platform for the development, production, and observation of data assets.
deeplearning-biology
A list of deep learning implementations in biology
hello
Classic hello world script in Nextflow language
hierarchicell
An R package for simulating cell-type specific and hierarchical single-cell expression data
Lending_Club
Predicting creditworthiness of loan applicants using logistic regression models (with R)
ML-React-App-Template
This is a template for creating a Machine Learning application with its front-end developed using React which interacts with a Flask service as the back-end and makes predictions.
RANN.L1
R package providing fast nearest neighbour search (wraps ANN library)
rnaseq
RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control
scFlowData
Supplementary data files for scFlow
shRNA-GUI
A simple PyQT5 GUI tool for design of oligonucleotides for cloning into a vector for shRNA mediated gene knockdown
test-datasets
Test data to be used for automated testing with the nf-core pipelines