coltonlloyd

Colton Lloyd's repositories

cobrame

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

Language:PythonNOASSERTION1 10

ecolime

Data and tools necessary to construct iLE1678-ME, a genome-scale model of E. coli K-12 MG1655 metabolism and expression

Language:PythonNOASSERTION1 10

fba4l_course_material

Language:Jupyter NotebookMIT1 10

OptAux

Reproduce the figures in "The genetic basis for adaptation of model-designed syntrophic co-cultures"

Language:PythonMIT1 20

qbio

Material for qbio18 mx

Language:Jupyter Notebook1 10

beng_213

Language:Jupyter Notebook010

cobrame_supplement

Scripts needed to reproduce the figures in https://doi.org/10.1371/journal.pcbi.1006302

Language:PythonMIT010

cobrapy

COBRApy is a package for constraints-based modeling of biological networks

Language:PythonGPL-2.0010

keff_mapping

Scripts to reproduce ME-model simulations from "Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers"

Language:PythonMIT010

me_biomass

Reproduce the figures in "Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth"

Language:Jupyter NotebookMIT010

minspan

Language:PythonMIT000

patRoon

Workflow solutions for mass-spectrometry based non-target analysis.

Language:RGPL-3.0000

solvemepy

solveME public repository

Language:Python010