codingene / BioShineR

Containerized Bioconductor and Shiny with Docker

BioShineR

Containerize Bioconductor and Shiny with DockeR

This serves as a base image to deploy a R Shiny application with Shiny-Server including some basic Bioconductor packages.

Whats the need?

Rocker-Project is already have a very nice rocker/shiny on Debian, But few dependency are missing while installing few R and Bioconductor packages.

Anyway this codingene/bioshiner made on top of rocker/shiny only and loosely follow the same principles.

Principles

• Image tags will represnt corresponding Bioconductor relese versions

  For example to use Bioconductor 3.11

   docker pull codingene/bioshiner:3.11
  

All Tags

image	Bioc-Version	R-Version
codingene/bioshiner:3.10	Bioconductor:3.10	R:3.6.1
codingene/bioshiner:3.11	Bioconductor:3.11	R:4.0.0

Test

Clone this repository containing test app

git clone https://github.com/codingene/BioShineR

Run the app

docker run --rm -p 3838:3838 \
	-v ${PWD}/BioShineR/test/apps/biocmanager:/srv/shiny-server/ \
	-v /srv/shinylog/:/var/log/shiny-server/ \
	codingene/bioshiner:3.11

Open the app in browser: http://localhost:3838/