codeneuro

neurofinder

benchmarking challenge for finding neurons in imaging data

notebooks

Interactive notebooks for trying analyses and exploring datasets

spikefinder

benchmarking challenge for spike detection in imaging data

neurofinder-datasets

dataset info for the neurofinder challenge

gitgoing

Get going with contributing to open source software

neurofinder-python

python module for testing neuron finding algorithms

datasets

Shared data sets for collaborating, testing, and benchmarking

neurofinder-docker

Docker image for Neurofinder challenge

spikefinder-datasets

dataset info for the spikefinder challenge

codeneuro.github.io

codeneuro landing page

byod

Bring your own data

neurofinder-notebooks

example jupyter notebooks running algorithms for neurofinder

spikefinder-python

python module for testing spike detection algorithms

algorithms

discussion

A repo for all discussion related to CodeNeuro

neurofinder-leaderboard-prototype

Web app for neurofinder challenge

neurofinder-site-prototype

Site with neurofinder landing page and leaderboard

notebooks-server

Modular deployment of tmpnb servers with Jupyter notebooks