cnstt's repositories
cookiecutter-napari-plugin
Cookiecutter for napari plugins
deep-finder
[THIS IS CURRENTLY ONLY A FORK DEDICATED TO napari-deepinder] Deep Finder is an original deep learning approach to localize macromolecules in cryo electron tomography images. The method is based on image segmentation using a 3D convolutional neural network.
Deformation-Segmentation
PyTorch implementation of Learning to Downsample for Segmentation of Ultra-High Resolution Images
genBoxes
Generate simple synthetic 3D point clouds
napari
napari: a fast, interactive, multi-dimensional image viewer for python
napari-deepfinder
A napari plugin for the DeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.
napari-stracking
Napari plugin for particles tracking
omnipose
Repository for the Omnipose package and associated scripts for the paper.