cnettel

cannyfs

A shim file system giving excellent throughput by assuming all I/O operations CAN complete successfully.

cnF2freq

Compute haplotype and genotype probabilities, and perform imputation, in arbitrary pedigrees, including cases under possible observational errors.

jackdaw

Tools for handling phase retrieval and related tasks in sparse (low-signal) X-ray single particle imaging applications, specifically COACS.

canaline

Match boxes to text.

containers

Containers for use on Singularity Hub

cxic9714-analysis

demorepo

Demo for workshop.

GenoCAE

Convolutional autoencoder for genotype data

grafana

Gorgeous metric viz, dashboards & editors for Graphite, InfluxDB & OpenTSDB

h5py

HDF5 for Python -- The h5py package is a Pythonic interface to the HDF5 binary data format.

imputato

Efficient imputation of auto-polyploids and other scenarios.

htslib

C library for high-throughput sequencing data formats

hummingbird

Monitoring and Analysing flash X-ray imaging experiments

libfuse

The reference implementation of the Linux FUSE (Filesystem in Userspace) interface

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

shapeit4

Segmented HAPlotype Estimation and Imputation Tool

Shocksolution_Examples

Example code from shocksolution.com

slurm

Slurm: A Highly Scalable Workload Manager

snmp-fetch

An opinionated python3.7 SNMPv2 package designed for rapid database ingestion.

uuadvstatcomp

Course Materials for R course

workshop-neural-nets-and-deep-learning

NBIS workshop in Neural Nets and Deep Learning