clwgg / nQuire

A statistical framework for ploidy estimation using NGS short-read data

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Problem allocating data in EM

mrmrwinter opened this issue · comments

Hi, Im getting the following error message

problem allocating data in EM

What does this error mean? And how can i fix it?

Thanks

Hi! It means that memory couldn't be allocated for the internal data structure used in the EM algorithm, but the reason for that could be pretty much anything! How big is your .bin file? Would it be possible to attach it here so I could check it out? If its prohibitively large, could you run the lrdmodel command through valgrind like so:

valgrind nQuire lrdmodel base.bin

and attach the output of that here?
thanks!

Hi,

I am facing the same error message... Did you managed to solve this?

Kind regards,
Shane