Beast code in Giters

Clemens Weiss's repositories

nQuire

A statistical framework for ploidy estimation using NGS short-read data

Language:CMIT54 2 18

seqfilter

Filter fasta/fastq(.gz) files by ID and/or sequence length

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seqstats

Quick summary statistics on fasta/fastq(.gz) files

Language:CMIT10 10

bamfreq

get base counts from bam alignment files

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spatial_extinction_sim

Language:PythonMIT3 10

jaxGPs

Gaussian Process Regression with JAX

Language:PythonMIT2 10

ts-ipc

inter-process communication with tree sequences

Language:PythonMIT100

admixtools

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bsh-ref

Sample genotypes from BAM alignments -- based on reference panel data

Language:CMIT010

MVNclust

Clustering using multivariate Gaussian mixtures

Language:CGPL-3.0000

anaconda-mode

Code navigation, documentation lookup and completion for Python.

Language:Emacs LispGPL-3.0000

bsh-denovo

Sample genotypes from BAM alignments -- discover sites de novo

Language:CMIT010

fap

Language:Jupyter Notebook000

feed2maildir

Convert an RSS/Atom feed to maildir

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GPflow

Gaussian processes in TensorFlow

Language:PythonApache-2.0000

htslib

C library for high-throughput sequencing data formats

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sgkit

Statistical genetics toolkit

Language:PythonApache-2.0000

shinyGMM

Language:RGPL-3.0010

spacemacs

A community-driven Emacs distribution - The best editor is neither Emacs nor Vim, it's Emacs *and* Vim!

Language:Emacs LispGPL-3.0000

spatialdata

An open and universal framework for processing spatial omics data

Language:PythonBSD-3-Clause000

spatialdata-io

Language:PythonBSD-3-Clause000

spatialdata-plot

Static plotting for spatialdata

Language:PythonBSD-3-Clause000

tskit

Analyse, create and manipulate tree sequences.

Language:PythonMIT000

ugat

Exponential decay fitting to ancient DNA C-to-T substitution patterns

Language:CGPL-3.001 1