cloudbroken's starred repositories

BetterDisplay

Unlock your displays on your Mac! Flexible HiDPI scaling, XDR/HDR extra brightness, virtual screens, DDC control, extra dimming, PIP/streaming, EDID override and lots more!

stat_rethinking_2022

Statistical Rethinking course winter 2022

grobid

A machine learning software for extracting information from scholarly documents

Language:JavaLicense:Apache-2.0Stargazers:3266Issues:94Issues:839

RoseTTAFold

This package contains deep learning models and related scripts for RoseTTAFold

Language:PythonLicense:MITStargazers:1956Issues:59Issues:128

cellxgene

An interactive explorer for single-cell transcriptomics data

Language:JavaScriptLicense:MITStargazers:596Issues:32Issues:1389

rig

The R Installation Manager

Language:RustLicense:MITStargazers:594Issues:8Issues:189

miloR

R package implementation of Milo for testing for differential abundance in KNN graphs

Language:RLicense:GPL-3.0Stargazers:318Issues:9Issues:240
Language:RLicense:NOASSERTIONStargazers:291Issues:8Issues:88

Freewire

An experiment with "freely" wired neural networks (no layers)

numbat

Haplotype-aware CNV analysis from single-cell RNA-seq

Language:RLicense:NOASSERTIONStargazers:157Issues:9Issues:173

breakerofchains

Break your chain at the cursor line. Run the first bit. See the output. Be free.

Language:RLicense:NOASSERTIONStargazers:155Issues:5Issues:20

intro-to-deepcell

An introduction to deepcell and deep learning

Language:Jupyter NotebookLicense:NOASSERTIONStargazers:136Issues:10Issues:14

DeepTCR

Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data

Language:Jupyter NotebookLicense:MITStargazers:110Issues:12Issues:48

HoneyBADGER

HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data

Language:RLicense:GPL-3.0Stargazers:95Issues:8Issues:44
Language:PythonLicense:NOASSERTIONStargazers:95Issues:7Issues:12

HE2RNA_code

Train a model to predict gene expression from histology slides.

Language:PythonLicense:GPL-3.0Stargazers:87Issues:7Issues:11

marugoto

Tools to build deep learning pipelines.

Language:PythonLicense:MITStargazers:75Issues:6Issues:12

STACAS

R package for semi-supervised single-cell data integration

Language:RLicense:GPL-3.0Stargazers:71Issues:5Issues:32
Language:PythonLicense:MITStargazers:40Issues:3Issues:40

SampleQC

Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data

Language:RLicense:NOASSERTIONStargazers:35Issues:3Issues:26

ha-melview

HomeAssistant component for mitsubishi air conditioner (MelView)

Language:Jupyter NotebookStargazers:20Issues:7Issues:5
Language:Jupyter NotebookLicense:NOASSERTIONStargazers:14Issues:1Issues:1

stromal_subclasses

code for data processing and visualisation associated with the stromal subclasses manuscript

sciCNV

Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution

Language:RStargazers:11Issues:0Issues:0
Language:PythonLicense:MITStargazers:10Issues:0Issues:0
Language:RLicense:NOASSERTIONStargazers:9Issues:0Issues:0
Language:RStargazers:4Issues:0Issues:0