cllantz

course-content

NMA Computational Neuroscience course

rastermap

a visualization method for neural data

AP_scripts_cortexlab

Scripts written in Matteo Carandini/Kenneth Harris' lab

brain_printer

Create a docker image to get an .stl from an MRI scan, for 3d printing

statements

Successful Job Applications and Grants

fooof

Parameterizing neural power spectra into periodic & aperiodic components.

Tutorials

Learn to do common Voytek Lab things.

DABEST-python

Data Analysis with Bootstrapped ESTimation

facemap

Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

seqNMF

An algorithm for unsupervised discovery of sequential structure

neuromorph

Neuron morphology toolbox

data-science-rnn

RNN implementation for Data Science course

BoutonAnalyzer

BoutonAnalyzer is software for detection and tracking of structural changes in en passant boutons in time-lapse light-microscopy stacks of images, developed by the Neurogeometry lab.

wave_clus

A fast and unsupervised algorithm for spike detection and sorting using wavelets and super-paramagnetic clustering

char-rnn

Multi-layer Recurrent Neural Networks (LSTM, GRU, RNN) for character-level language models in Torch

vhlab-toolbox-matlab

General purpose Matlab toolbox for neuroscience research created by Van Hooser lab and collaborators

ChrisLUTs

A collection of LUTs for ImageJ/Fiji

stab-bot-5000

primitive

Reproducing images with geometric primitives.

KiloSort

GPU code for spike sorting

djcat-visual-stimuli

A datajoint-matlab pipeline for presenting and recording visual stimuli with PsychToolbox.