clementsan

pytorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration

cupy

NumPy & SciPy for GPU

Slicer

Multi-platform, free open source software for visualization and image computing.

MONAI

AI Toolkit for Healthcare Imaging

torchio

Medical imaging toolkit for deep learning

ir-tp-net

AI-based 3D depth sensing from stereo vision systems

ShapeWorksStudio

Shapeworks Studio is a free shape analysis tool.

fluorender

FluoRender is an interactive rendering tool for confocal microscopy data visualization.

ImageVis3D

An out-of-core volumetric rendering application.

Seg3D

Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute.

SCIRun

SCIRun is a Problem Solving Environment, for modeling, simulation and visualization of scientific problems. This is version 5, the upgraded version of SCIRun v4.

ShapeWorks

ShapeWorks

SPHARM-PDM

Shape analysis has become of increasing interest to the medical community due to its potential to precisely locate morphological changes between healthy and pathological structures. SPHARM-PDM is a tool that computes point-based models using a parametric boundary description for the computing of Shape analysis.

MriWatcher

This simple visualization tool allows to load several images at the same time

ARCTIC

ARCTIC (Automatic Regional Cortical ThICkness) is an end-to-end application developped at UNC-Chapel Hill allowing individual regional analysis of cortical thickness

AutoSeg

AutoSeg is a C++ based application developed at UNC-NIRAL that performs automatic brain tissue classification and structural segmentation, including multi-atlas segmentation

CCSeg

Corpus Callosum Segmentation Tool CCSeg is an open-source C++-based application developed at UNC-Chapel Hill that allows automatic as well as user-interactive segmentation of the Corpus Callosum

DTI-Reg

DTI-Reg is an open-source C++ application that performs pair-wise DTI registration, using scalar FA map to drive the registration

DTIFiberTractStatistics

This is a software which allows the user to study the behavior of water diffusion (using DTI data) along the length of the white matter fiber-tracts

DTIPrep

DTIPrep performs a "Study-specific Protocol" based automatic pipeline for DWI/DTI quality control and preparation

niral_utilities

NIRAL Utilities are open-source applications developped at UNC-Chapel Hill in the Neuro Image Research and Analysis Lab (NIRAL)

BinarySegmentation_Docker

Binary segmentation for Docker

ImageComparison_Docker

ctracks-app

ctracks-app, using cTracks as a React Component / npm package

higlass

Fast contact matrix visualization for the web.

stable-diffusion

Stable Diffusion

cnn-image-regression

AI-based image regression tasks (via CNN networks)

synth-image-generation-wgan

Synthetic image generation via WGAN model

cnn-image-classification-uncertainty

AI-based image classification tasks with uncertainty estimation

cnn-image-classification

AI-based image classification tasks (via CNN networks)