Clemens Hug's repositories
cluequery
An R interface to the Connectivity Map API at clue.io
dge_comparison
Comparison of digital gene expression (DGE) and bulk RNA-seq
synExtra
Extension of `synapser`, a Synapse R client developed by Sage Bionetworks
curl
A Modern and Flexible Web Client for R
DaPars2
Dynamics analysis of Alternative PolyAdenylation from RNA-seq
DRIAD
Drug Repurposing in Alzheimer's Disease
Fooocus
Focus on prompting and generating
gitcreds
Query git credentials from R (experimental)
mcmicro
Multiple-choice microscopy pipeline
Melanoma_BMAL1_Plasticity
This repository includes all of the codes used for image processing, single cell analysis, and spatial analysis for this collaboration
morgancpp
Efficient structure for storing and comparing Morgan fingerprints
ord-work
Workspace for ordinalRidge
ordinalRidge
Fast solver for ordinal logistic regression with a ridge penalty
PartSeg
Tool for segmentation in bioimaging
PythonEmbedInR
Based off of PythonInR (https://bitbucket.org/Floooo/pythoninr/) but includes a standalone, compiled from source python instead of relying on the python installed on the host machine
quantification
Quantification module for mcmicro
rdkit
The official sources for the RDKit library
shiny
Easy interactive web applications with R
SPRINT
SNP-free RNA editing Identification Toolkit
yardstick
Tidy methods for measuring model performance
yonder
A reactive web framework built on shiny