clauswilke

ggjoy

Deprecated. Please use ggridges.

relayer

Rethinking layers in ggplot2

proteinER

Supporting code for the paper "Measuring evolutionary rates of proteins in a structural context"

structural_prediction_of_ER

Code and data for Shahmoradi et al., Predicting evolutionary site variability from structure in viral proteins: buriedness, packing, flexibility, and design, J. Mol. Evol. 79:130–142 (2014).

codon_tools

A python package containing various tools for codon optimization and de-optimization.

Ecoli_FBA_input_prediction

Code and data for Sridhara et al., Predicting growth conditions from internal metabolic fluxes in an in-silico model of E. coli, PLOS ONE 9:e114608 (2014).

GBM_genomics

protein_design_and_site_variability

Code and data for Jackson et al, Amino-acid site variability among natural and designed proteins, PeerJ 1:e211 (2013).

MACV_SMD

Code and data for Meyer et al, Analyzing Machupo virus-receptor binding by molecular dynamics simulations, PeerJ 2:e266 (2014).

US_County_Level_Election_Results_08-16

United States General Election Presidential Results by County from 2008 to 2016

Guo_etal_SCV

Data and code for Guo et al., Single-cell virology

viz-pub

A place to publish data-vizes

colorspace

This is a fork of the CRAN R package 'colorspace'.

Deriv

Symbolic differentiation

ecoli_learning_bacterial_response_optimization-1

next step in machine learning paper

evol_sim_vs_rosetta

Repository for code and data from the paper "Beyond thermodynamic constraints" by Jiang et al.

flupan

Python library to parse influenza passaging annotations

ggforce

Accelerating ggplot2

gr

Multiple git repository management tool

pdf2pdf

does the magical pdf-to-pdf conversion popular in academic journal submission sites

py-tex-wrap

Automatically exported from code.google.com/p/py-tex-wrap

scales

Graphical scales

statebins

Alternative to choropleths of US States ala http://bit.ly/statebins

StickersStandard

The Stickers Standard

symbolicR

Symbolic operation functions, including simplifier, symbolic match functions and rule based simplifier generator.

t7-attenuation