Charlie's starred repositories
SurvivalAnalysisPython
Explorations of survival analysis in Python
phy2-plugins
Plugins for Phy2
NeuroPyxels
NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.
neuropixels_trajectory_explorer
Neuropixels trajectory explorer with the Allen CCF mouse atlas
AP_histology
Histology processing
coding-interview-university
A complete computer science study plan to become a software engineer.
SpikeRasters
demonstration of using rasterization in matplotlib and the scour library to simplify working with spike raster plots
spikeinterface
A Python-based module for creating flexible and robust spike sorting pipelines.
spikeline_cloud
Spike sorting pipeline for generating consensus units from neuropixel recordings.
neuropixel-utils
Utilities for managing Neuropixel datasets and Kilosort results
ecephys_spike_sorting
Modules for processing extracellular electrophysiology data from Neuropixels probes
npy-matlab
Experimental code to read/write NumPy .NPY files in MATLAB
Tetroplater
An open-source circuit for microwire tetrode gold plating